Preprint / Version 1

Key Features of SARS-CoV-2 and Available Therapies for COVID-19

Authors

  • Syed Ali Raza Shah Department of Microbiology, Hazara University, Mansehra, KPK, Pakistan.
  • Abdullah Department of Microbiology, Abdul Wali Khan University, Mardan, KPK, Pakistan.
  • S. Yousaf Shah Ayub Teaching Hospital, Abbottabad, KPK, Pakistan.
  • Farhana Maqbool Department of Microbiology, Hazara University, Mansehra, KPK, Pakistan.
  • Atif Hameed Ayub Teaching Hospital, Abbottabad, KPK, Pakistan.

Abstract

The disease caused by severe acute respiratory syndrome (SARS-CoV2) is highly pathogenic and communicable infection, progressed in Wuhan city of China and then goes viral around the globe. The Genomic investigations exposed that Phylogenetically SARS-CoV2 resembles the other SARS-like bat viruses, therefore bats were also considered as the possible potential reservoir for SARS-CoV2. There are 2 prevalent types of SARS-CoV2, L type (~70%) and S type (~30%).The L strains are considered more infectious and virulent than the ancestral S strain. The positive sense single-stranded RNA genetic material contains 29891 nucleotides which codes for 9860 amino acids. The ORF1a/b is involved in carrying the translation of two (2) polyproteins, pp1a and pp1ab as well as the encoding of 16 NSPs (Non-structural proteins), and the leftover ORFS can bring about the encoding of non-essential and structural proteins. The origination source and transmission to humankinds is still not clear, but the intermediate hosts are supposed to have a significant role in the transfer and emergence of SARS-CoV2 from bats to humans. There is still no approved drug or vaccine available for Covid-19. In the current review, we condense and fairly evaluate the emergence and pathogenicity of SARS-CoV2, SARS-CoV and MERS-CoV. Moreover, we also discuss the treatment and vaccine developments strategies for Covid-19.

Keywords:

Coronaviruses, COVID-19, Outbreak, SARS-CoV-2, Transmission

Downloads

Download data is not yet available.

References

Richman DD, Whitley RJ, Hayden FG, eds. Clinical virology, 4th edn. Washington: ASM Press, 2016.

Ksiazek TG, Erdman D, Goldsmith CS, et al (2003). A novel coronavirus associated with severe acute respiratory syndrome. N Engl J Med348:1953–66

Kuiken T, Fouchier RAM, Schutten M, et al (2003)Newly discovered coronavirus as the primary cause of severe acute respiratory syndrome. Lancet 362:263–70

Drosten C, Günther S, Preiser W, et al (2003) Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N Engl J Med 348:1967–1976

de Groot RJ, Baker SC, Baric RS, et al (2013) Middle East respiratory syndrome coronavirus (MERS-CoV): announcement of the Coronavirus Study Group. J Virol 87:7790–7792

Zaki AM, van Boheemen S, Bestebroer TM, Osterhaus ADME, Fouchier RAM (2012) Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N Engl J Med 367:1814–1820

WHO. Summary of probable SARS cases with onset of illness from 1 November 2002 to 31 July 2003. Dec 31, 2003. Accessed April 24, 2020. Available from https://www. who.int/csr/sars/country/table2004_04_21/en/.

WHO. Middle East respiratory syndrome coronavirus (MERS-CoV). November, 2019. Acessed April 24, 2020. Available from http://www.who.int/emergencies/mers-cov/en/.

Beaudette FR, Hudson CB (1937) Cultivation of the virus of infectious bronchitis. J Am VetMedAssoc 90:51-58

Tang X, Wu C, Li X, et al (2020)on the origin and continuing evolution of SARS-CoV-2.NatSciRev (in press).

Sanche S, Lin YT, XU C, et al (2019). The novel coronavirus, 2019-nCoV, is highly contagious and more infectious than initially estimated. Br Med J. https://doi.org/10.1101/2020.02.07.20021154.

Sun K, Chen J, Viboud C (2020)early epidemiological analysis of the coronavirus disease 2019 outbreak based on crowdsourced data: a population-level observational study. The Lancet.http://doi.org/10.1016/S2589-7500(20)30026-1.

WHO. Novel coronavirus – China. Jan 12, 2020. [Accessed April 24, 2020]. Available from http://www.who. Int/csr/don/12-january-2020-novel-coronavirus-china/en/.

Lu H, Stratton CW, Tang Y (2020) Outbreak of Pneumonia of Unknown Etiology in Wuhan China: the Mystery and the Miracle. J Med Virol.25678.

World Health Organization (2020) WHO Director-General’s remarks at the media briefing on 2019-nCoV on 11 February 2020. Accessed April 24, 2020. Available fromhttps://www.who.int/dg/speeches/detail/who-directorgeneral-s-remarks-at-the-media-briefing-on-2019-ncov-on-11-february-2020.

Chen N, Zhou M, Dong X, et al (2020)Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study. Lancet20:30211-30217

Wang D, Hu B, Hu C, et al (2020) Clinical Characteristics of 138 Hospitalized Patients With 2019 Novel Coronavirus–Infected Pneumonia in Wuhan, China. JAMA.doi: 10.1001/jama.2020.1585

N Zhong, B. Zheng, Y. Li, L. Poon, Z. Xie, K. Chan, et al (2003)Epidemiology and cause of severe acute respiratory syndrome (SARS) in Guangdong, People's Republic of China, in February, 2003. Lancet 362:1353-1358

Chinese SARS Molecular Epidemiology Consortium (2004) Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China. Science303:1666–1669

Bermingham A, Chand MA, Brown CS, Aarons E, Tong C, Langrish C, et al (2012). Severe respiratory illness caused by a novel coronavirus, in a patient transferred to the United Kingdom from the Middle East, September 2012. Euro Surveill17:202-290

WHO. Summary and risk assessment of current situation in Republic of Korea and China (2015). Accessed April 24, 2020. Available from http://www.who.int/csr/disease/coronavirus_infections/risk-assessment-19june2015/en/

Korean Society of Infectious D, Korean Society for Healthcare-associated Infection C, Korean Society for Healthcare-associated Infection C, Prevention (2015)An unexpected outbreak of middle east respiratory syndrome coronavirus infection in the Republic of Korea. Infect Chemother47:120–122

L.T. Phan, T.V. Nguyen, Q.C. Luong, T.V. Nguyen, H.T. Nguyen, H.Q. Le, et al (2020)Importation and human-to-human transmission of a novel coronavirus in Vietnam.NEngl J Med (in press)

Riou J, Althaus CL (2020) Pattern of early human-to-human transmission of Wuhan 2019 novel coronavirus (2019-nCoV), December 2019 to January 2020. EuroSurveill25 (in press)

Parry J (2020) China coronavirus: cases surge as official admits human to human transmission. Brit MedJPublish. Grp (in press)

Q. Li, X. Guan, P. Wu, X. Wang, L. Zhou, Y. Tong, et al (2020)Early transmission dynamics in Wuhan, China, of novel coronavirus–infected pneumonia. N Engl J Med (in press)

Guan Y, Zheng BJ, He YQ, Liu XL, Zhuang ZX, Cheung CL, et al (2003) Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science302:276–278

Centers for Disease C, Prevention (2003) Prevalence of IgG antibody to SARS-associated coronavirus in animal traders--Guangdong Province, China, 2003. Morb Mortal Wkly Rep52:986–987

Xu HF, Wang M, Zhang ZB, Zou XZ, Gao Y, Liu XN, et al (2004) An epidemiologic investigation on infection with severe acute respiratory syndrome coronavirus in wild animals traders in Guangzhou. Zhonghuayu fang yixuezazhi38:81–83

B.J. Zheng, Y. Guan, K.H. Wong, J. Zhou, K.L. Wong, B.W.Y. Young, et al(2004)SARS-related virus predating SARS outbreak Hong Kong. Emerg. Infect. Dis 10:176-178

Z. Shi, Z. Hu (2008) A review of studies on animal reservoirs of the SARS coronavirus.Virus Res133:74-87

Falcon A, Vazquez-Moron S, Casas I, Aznar C, Ruiz G, Pozo F, et al (2011) Detection of alpha and betacoronaviruses in multiple Iberian bat species. Arch Virol156:1883–1890

J. Huynh, S. Li, B. Yount, A. Smith, L. Sturges, J.C. Olsen, et al (2012)Evidence supporting a zoonotic origin of human coronavirus strain NL63.JVirol86:12816-12825

S.K. Lau, K.S. Li, A.K. Tsang, C.S. Lam, S. Ahmed, H. Chen, et al (2013)Genetic characterization of Betacoronavirus lineage C viruses in bats reveals marked sequence divergence in the spike protein of pipistrellus bat coronavirus HKU5 in Japanese pipistrelle: implications for the origin of the novel Middle East respiratory syndrome coronavirus. JVirol 87:8638-8650

Zhou P, Yang XL, Wang XG, Hu B, Zhang L, Zhang W, et al (2020) A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature (in press)

R. Lu, X. Zhao, J. Li, P. Niu, B. Yang, H. Wu, et al (2020)Genomic characterization and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding. The Lancet (in press)

J.F.-W. Chan, S. Yuan, K.-H. Kok, K.K.-W. To, H. Chu, J. Yang, et al (2020) A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster.The Lancet(in press)

Wu F, Zhao S, Yu B, Chen YM, Wang W, Song ZG, et al (2020)A new coronavirus associated with human respiratory disease in China. Nature2020 (in press)

J.F.-W. Chan, K.-H. Kok, Z. Zhu, H. Chu, K.K.-W. To, S. Yuan, et al (2020)Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan. Emerg. Microb Infect. 9:221-236

Pillaiyar, T., Meenakshisundaram, S. and Manickam, M (2020) Recent discovery and development of inhibitors targeting coronaviruses. Drug Discovery Today(in press)

Wu, Y. Peng, B. Huang, X. Ding, X. Wang, P. Niu, et al (2020)Genome composition and divergence of the novel coronavirus (2019-nCoV) originating in China. Cell Host & Microbe (in press)

Wu F, Zhao S, Yu B, Chen YM, Wang W, Song ZG, et al (2020)A new coronavirus associated with human respiratory disease in China. Nature(in press)

De Wit E, van Doremalen N, Falzarano D, Munster VJ (2016) SARS and MERS: recent insights into emerging coronaviruses. Nat Rev Microbiol14:523–534

Song Z, Xu Y, Bao L, Zhang L, Yu P, Qu Y, et al (2019) From SARS to MERS, thrusting coronaviruses into the spotlight. Viruses11:59

Cui J, Li F, Shi ZL (2019) Origin and evolution of pathogenic coronaviruses. Nat Rev Microbiol17:181–192

Wu F, Zhao S, Yu B, Chen YM, Wang W, Song ZG, et al (2020)A new coronavirus associated with human respiratory disease in China. Nature(in press)

Wu A, Peng Y, Huang B, Ding X, Wang X, Niu P, et al (2020) Genome composition and divergence of the novel coronavirus (2019-nCoV) originating in China. Cell Host Microbe (in press)

Angeletti S, Benvenuto D, Bianchi M, Giovanetti M, Pascarella S, Ciccozzi M (2020) COVID-2019: the role of the nsp2 and nsp3 in its pathogenesis. J Med Virol (in press)

Zhang L, Shen FM, Chen F, Lin Z (2020) Origin and evolution of the 2019 novel coronavirus. Clin Infect Dis (in press)

Wu D, Zou S, Bai T, Li J, Zhao X, Yang L, et al (2015) Poultry farms as a source of avian influenza a (H7N9) virus reassortment and human infection. Sci Rep5:7630

Li Q, Guan X, Wu P, Wang X, Zhou L, Tong Y et al (2020) Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus-Infected Pneumonia. N Engl J Med (in press)

Bauch C.T, Lloyd-Smith J.O, Coffee M.P, Galvani A.P (2005) Dynamically modeling SARS and other newly emerging respiratory illnesses: past, present, and future. Epidemiology16:791-801

Rothan, H.A. and Byrareddy, S.N (2020)The epidemiology and pathogenesis of coronavirus disease (COVID-19) outbreak. J Autoimmun,102433(in press)

Li, X., Geng, M., Peng, Y., Meng, L. and Lu, S (2020) Molecular immune pathogenesis and diagnosis of COVID-19. J Pharmaceutic Anal(in press)

Prompetchara, E., Ketloy, C. and Palaga, T (2020) Immune responses in COVID-19 and potential vaccines: Lessons learned from SARS and MERS epidemic. Asian Pac J Allerg. Immunol (in press)

Xu, Z., Shi, L., Wang, Y., Zhang, J., Huang, L., Zhang, C., Liu, S., Zhao, P., Liu, H., Zhu, L. and Tai, Y (2020) Pathological findings of COVID-19 associated with acute respiratory distress syndrome. The Lancet Respir Med(in press)

Hui D.S, Chow B.K, Lo T, Tsang O.T.Y, Ko F.W, Ng S.S, Gin T, Chan M.T.V (2019) Exhaled air dispersion during high-flow nasal cannula therapy versus CPAP via different masks. EurRespirJ53.

Russell, C.D., Millar, J.E. and Baillie, J.K (2020) Clinical evidence does not support corticosteroid treatment for 2019-nCoV lung injury. The Lancet 395:473-475

Chu, C.M., Cheng, V.C.C., Hung, I.F.N., Wong, M.M.L., Chan, K.H., Chan, K.S., Kao, R.Y.T., Poon, L.L.M., Wong, C.L.P., Guan, Y. and Peiris, J.S.M (2004) Role of lopinavir/ritonavir in the treatment of SARS: initial virological and clinical findings. Thorax59:252-256

Covid-19 Drug therapy. Accessed April 24, 2020. Available from https://www.elsevier.com/__data/assets/pdf_file/0007/988648/COVID-19-Drug-Therapy_Mar-2020.pdf

Gordon CJ, Tchesnokov EP, Feng JY, Porter DP, Gotte M (2020) The antiviral compound remdesivir potently inhibits RNA-dependent RNA polymerase from Middle East respiratory syndrome coronavirus. J. Biol. Chem (in press)

De Wit E, Feldmann F, Cronin J, Jordan R, Okumura A, Thomas T, Scott D, Cihlar T, Feldmann H (2020) Prophylactic and therapeutic remdesivir (GS-5734) treatment in the rhesus macaque model of MERS-CoV infection. Proc. Natl. Acad. Sci U.S.A.

Remdisivir most promising COVID-19 drug. Accessed April 24, 2020. Available from https://www.drugtargetreview.com/news/58608/remdesivir-most-promising-covid-19-drug-say-researchers/

McKay B.L.P (2020). Drugmakers rush to develop vaccines against china virus the wall street journal. [Cited 2020 28 April]; Available from: <https://www.wsj.com/articles/drugmakers-rush-to-develop-vaccines-against-china-virus-11579813026>.

Inovio I.P (2020)Inovio selected by cepi to develop vaccine against new coronavirus inovio. [Cited 2020 29 April]; Available from: <http://ir.inovio.com/news-and-media/news/press-release-details/2020/Inovio-Selectedby-CEPI-to-Develop-Vaccine-Against-NewCoronavirus/default.aspx>.

Lee LZ (2020) Chinese scientists race to develop vaccine as coronavirus death toll jumps: South china morning post. [Cited 2020 29 April]; Available from: <https://www.scmp.com/news/china/society/article/3047676/numbercoronavirus-cases-china-doubles-spread-rate-accelerates>.

Cheung E (2020) China coronavirus: Hong Kong researchers have already developed vaccine but need time to test it, expert reveals: South china morning post. Accessed April 24, 2020. Available from:https://www.scmp.com/news/hongkong/health-environment/article/3047956/china-coronavirus-hong-kong-researchers-have.

Shereen, Muhammad Adnan, Suliman Khan, Abeer Kazmi, Nadia Bashir, and Rabeea Siddique. "COVID-19 infection: origin, transmission, and characteristics of human coronaviruses." Journal of Advanced Research (2020).

Downloads

Posted

2020-06-01

Section

Coronavirus

Categories